PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG201500.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 280aa    MW: 30461.1 Da    PI: 7.6436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG201500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.7e-072401254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Pavir.1NG201500.2.p  2 RRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 40
                         ****************997....799***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.823140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-10263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-4244No hitNo description
SuperFamilySSF474591.03E-9259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRRDKLNEQF QELGNTLDPD RPRNDKATIL GDTIQMLKDL TSQVNKLKGD YTSLSEEARE  60
LTQEKNELRD EKASLKSEVD NLNNQCQQRM RLLYPWAGME PSVVIGPPPA YPYPVPLAIP  120
SGSVPMHPRL QAYPFLHSQT SGTIPNACTP CMAYTQPCHP PNDQPSNKFN SPVAHSSSHR  180
SNSPARDCRS KPSTLRQASC GVRTTGVCDV ATDLELKTPG SSGPSHSEIT TKDSSSDMKT  240
KKQCIKQINC STLTEGTSSS RCSSSGHPDV SNTVGDGCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.420887e-38leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.11e-162PREDICTED: transcription factor bHLH121-like
TrEMBLK3YU581e-162K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m1e-162(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-60bHLH family protein